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1

WHY DOES A METHOD THAT FAILS CONTINUE TO BE USED?

L. Lacey Knowles

Journal:

Year:

2008

Language:

english

File:

PDF, 128 KB

english, 2008

2

Phylogenetic Analysis of Montane Grasshoppers from Western North America (Genus Melanoplus, Acrididae: Melanoplinae)

Knowles, L. Lacey, Otte, D.

Journal:

Annals of the Entomological Society of America

Year:

2000

Language:

english

File:

PDF, 210 KB

english, 2000

3

Statistical Phylogeography

L. Lacey Knowles

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2009

Language:

english

File:

PDF, 2.96 MB

english, 2009

4

Intergenomic conflict revealed by patterns of sex-biased gene expression

Tim Connallon, L. Lacey Knowles

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 128 KB

english, 2005

5

DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE IN APHELOCOMA JAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

John E. McCormack, Amanda J. Zellmer, L. Lacey Knowles

Journal:

Year:

2010

Language:

english

File:

PDF, 446 KB

english, 2010

6

Statistical Phylogeography

Knowles, L. Lacey

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

7

Testing for biogeographic mechanisms promoting divergence in Caribbean crickets (genus Amphiacusta)

Elen Oneal, Daniel Otte, L. Lacey Knowles

Journal:

Journal of Biogeography

Year:

2010

Language:

english

File:

PDF, 563 KB

english, 2010

8

Genomic tests of the species-pump hypothesis: Recent island connectivity cycles drive population divergence but not speciation in Caribbean crickets across the Virgin Islands

Papadopoulou, Anna, Knowles, L. Lacey

Journal:

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

9

Delimiting Species without Monophyletic Gene Trees

Knowles, L. Lacey, Carstens, Bryan

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

10

Phylogenetic structure of vertebrate communities across the Australian arid zone

Lanier, Hayley C., Edwards, Danielle L., Knowles, L. Lacey, Riddle, Brett

Journal:

Journal of Biogeography

Year:

2013

Language:

english

File:

PDF, 3.37 MB

english, 2013

11

TESTS OF PLEISTOCENE SPECIATION IN MONTANE GRASSHOPPERS (GENUS MELANOPLUS) FROM THE SKY ISLANDS OF WESTERN NORTH AMERICA

Knowles, L. Lacey

Journal:

Year:

2000

Language:

english

File:

PDF, 267 KB

english, 2000

12

Author Correction: Decimated little brown bats show potential for adaptive change

Auteri, Giorgia G., Knowles, L. Lacey

Journal:

Scientific Reports

Year:

2020

File:

PDF, 613 KB

2020

13

Diversification History of Clown Tree Frogs in Neotropical Rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group)

Pirani, Renata M., Peloso, Pedro L.V., Prado, Joyce R., Polo, Ãrico, Lacey Knowles, L., Ron, Santiago R., Rodrigues, Miguel T., Sturaro, Marcelo J., Werneck, Fernanda P.

Journal:

Molecular Phylogenetics and Evolution

Year:

2020

File:

PDF, 3.51 MB

2020

14

New species boundaries and the diversification history of marsh rat taxa clarifies historical connections among ecologically and geographically distinct wetlands of South America

Rodrigues do Prado, Joyce, Lacey Knowles, L., Reis Percequillo, Alexandre

Journal:

Molecular Phylogenetics and Evolution

Year:

2020

File:

PDF, 3.03 MB

2020

15

EVIDENCE FOR OVERDOMINANT SELECTION MAINTAINING X-LINKED FITNESS VARIATION IN DROSOPHILA MELANOGASTER

Tim Connallon, L. Lacey Knowles

Journal:

Year:

2006

Language:

english

File:

PDF, 130 KB

english, 2006

16

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

L. Lacey Knowles

Journal:

Systematic Biology

Year:

2009

Language:

english

File:

PDF, 960 KB

english, 2009

17

Socially Parasitic Ants Evolve a Mosaic of Host-Matching and Parasitic Morphological Traits

Fischer, Georg, Friedman, Nicholas R., Huang, Jen-Pan, Narula, Nitish, Knowles, L. Lacey, Fisher, Brian L., Mikheyev, Alexander S., Economo, Evan P.

Journal:

Current Biology

Year:

2020

File:

PDF, 2.04 MB

2020

18

Supplement 5 || Exploring the Consequences of Postmating-Prezygotic Interactions between the Sexes

L. Lacey Knowles, B. Brodie Hernandez and Therese A. Markow

Journal:

Proceedings Biological Sciences

Year:

2004

Language:

english

File:

PDF, 573 KB

english, 2004

19

Genealogical Portraits of Speciation in Montane Grasshoppers (Genus Melanoplus) from the Sky Islands of the Rocky Mountains

L. Lacey Knowles

Journal:

Proceedings Biological Sciences

Year:

2001

Language:

english

File:

PDF, 855 KB

english, 2001

20

Insight into Speciation from Historical Demography in the Phytophagous Beetle Genus Ophraella

L. Lacey Knowles, Douglas J. Futuyma, Walter F. Eanes and Bruce Rannala

Journal:

Year:

1999

Language:

english

File:

PDF, 1.47 MB

english, 1999

21

Estimating a Geographically Explicit Model of Population Divergence

L. Lacey Knowles and Bryan C. Carstens

Journal:

Year:

2007

Language:

english

File:

PDF, 2.73 MB

english, 2007

22

What Is the Danger of the Anomaly Zone for Empirical Phylogenetics?

Huateng Huang and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2009

Language:

english

File:

PDF, 2.25 MB

english, 2009

23

Is Recombination a Problem for Species-Tree Analyses?

Hayley C. Lanier and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2012

Language:

english

File:

PDF, 2.18 MB

english, 2012

24

Tests of the Role of Sexual Selection in Genitalic Divergence with Mutiple Hybrid Clines

Knowles, L. Lacey, Chappell, Thomas M., Marquez, Eladio J., Cohn, Theodore J.

Journal:

Journal of Orthoptera Research

Year:

2016

Language:

english

File:

PDF, 392 KB

english, 2016

25

Inferring the geographic origin of a range expansion: latitudinal and longitudinal coordinates inferred from genomic data in an ABC framework with the program x - origin

He, Qixin, Prado, Joyce R., Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2017

Language:

english

File:

PDF, 999 KB

english, 2017

26

A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories

Knowles, L. Lacey, Huang, Huateng, Sukumaran, Jeet, Smith, Stephen A.

Journal:

American Journal of Botany

Year:

2018

Language:

english

File:

PDF, 402 KB

english, 2018

27

Shifting distributions and speciation: species divergence during rapid climate change

BRYAN C. CARSTENS, L. LACEY KNOWLES

Journal:

Molecular Ecology

Year:

2007

Language:

english

File:

PDF, 176 KB

english, 2007

28

In defence of model-based inference in phylogeography

MARK A. BEAUMONT, RASMUS NIELSEN, CHRISTIAN ROBERT, JODY HEY, OSCAR GAGGIOTTI, LACEY KNOWLES, ARNAUD ESTOUP, MAHESH PANCHAL, JUKKA CORANDER, MIKE HICKERSON, SCOTT A. SISSON, NELSON FAGUNDES, LOUNÈS CH

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 156 KB

english, 2010

29

Nonantagonistic interactions between the sexes revealed by the ecological consequences of reproductive traits

L. Lacey Knowles, B. Brodie Hernandez, T. A. Markow

Journal:

Journal of Evolutionary Biology

Year:

2005

Language:

english

File:

PDF, 175 KB

english, 2005

30

Tests of phenotypic and genetic concordance and their application to the conservation of Panamanian golden frogs (Anura, Bufonidae)

CORINNE L. RICHARDS, L. LACEY KNOWLES

Journal:

Molecular Ecology

Year:

2007

Language:

english

File:

PDF, 236 KB

english, 2007

31

Conflict begets diversity?

L.Lacey Knowles

Journal:

Trends in Ecology & Evolution

Year:

2000

Language:

english

File:

PDF, 131 KB

english, 2000

32

Mimics here and there, but not everywhere: Müllerian mimicry in Ceroglossus ground beetles?

Muñoz-Ramírez, Carlos P., Bitton, Pierre-Paul, Doucet, Stéphanie M., Knowles, Lacey L.

Journal:

Biology Letters

Year:

2016

Language:

english

File:

PDF, 623 KB

english, 2016

33

EVIDENCE FOR OVERDOMINANT SELECTION MAINTAINING X-LINKED FITNESS VARIATION IN DROSOPHILA MELANOGASTER

Connallon, Tim, Knowles, L. Lacey

Journal:

Year:

2006

Language:

english

File:

PDF, 138 KB

english, 2006

34

Estimating Species Phylogeny from Gene-Tree Probabilities despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers

Bryan C. Carstens and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 2.73 MB

english, 2007

35

TESTS OF INBREEDING EFFECTS ON HOST-SHIFT POTENTIAL IN THE PHYTOPHAGOUS BEETLE OPHRAELLA COMMUNA

Knowles, L. Lacey, Levy, André, McNellis, Jason M., Greene, Kimberly P., Futuyma, Douglas J.

Journal:

Year:

1999

Language:

english

File:

PDF, 690 KB

english, 1999

36

Evolving in isolation: Genetic tests reject recent connections of Amazonian savannas with the central Cerrado

Resende-Moreira, Luciana C., Knowles, L. Lacey, Thomaz, Andréa T., Prado, Joyce R., Souto, Andrea P., Lemos-Filho, José P., Lovato, Maria Bernadete

Journal:

Journal of Biogeography

Year:

2018

Language:

english

File:

PDF, 2.22 MB

english, 2018

37

Similar but different: Revealing the relative roles of species-traits versus biome properties structuring genetic variation in South American marsh rats

Prado, Joyce R., Percequillo, Alexandre R., Thomaz, Andréa T., Knowles, L. Lacey

Journal:

Journal of Biogeography

Year:

2019

File:

PDF, 2.33 MB

2019

38

Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses

Corinne L. Richards, Bryan C. Carstens, L. Lacey Knowles

Journal:

Journal of Biogeography

Year:

2007

Language:

english

File:

PDF, 391 KB

english, 2007

39

Coupling Genetic and Ecological-Niche Models to Examine How Past Population Distributions Contribute to Divergence

L. Lacey Knowles, Bryan C. Carstens, Marcia L. Keat

Journal:

Current Biology

Year:

2007

Language:

english

File:

PDF, 697 KB

english, 2007

40

Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification

Papadopoulou, Anna, Knowles, L. Lacey

Journal:

Year:

2017

Language:

english

File:

PDF, 979 KB

english, 2017

41

Spatially explicit models of dynamic histories: examination of the genetic consequences of Pleistocene glaciation and recent climate change on the American Pika

JASON L. BROWN, L. LACEY KNOWLES

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 4.86 MB

english, 2012

42

INTEGRATIVE TESTING OF HOW ENVIRONMENTS FROM THE PAST TO THE PRESENT SHAPE GENETIC STRUCTURE ACROSS LANDSCAPES

He, Qixin, Edwards, Danielle L., Knowles, L. Lacey

Journal:

Year:

2013

Language:

english

File:

PDF, 814 KB

english, 2013

43

Effects of missing data on species tree estimation under the coalescent

Hovmöller, Rasmus, Lacey Knowles, L., Kubatko, Laura S.

Journal:

Molecular Phylogenetics and Evolution

Year:

2013

Language:

english

File:

PDF, 572 KB

english, 2013

44

Museum Specimens and Phylogenies Elucidate Ecology's Role in Coevolutionary Associations between Mites and Their Bee Hosts

Pavel B. Klimov, Barry M. OConnor and L. Lacey Knowles

Journal:

Year:

2007

Language:

english

File:

PDF, 1.83 MB

english, 2007

45

Quantifying the similarity between genes and geography across Alaska's alpine small mammals

Knowles, L. Lacey, Massatti, Rob, He, Qixin, Olson, Link E., Lanier, Hayley C.

Journal:

Journal of Biogeography

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

46

Testing main Amazonian rivers as barriers across time and space within widespread taxa

Pirani, Renata M., Werneck, Fernanda P., Thomaz, Andréa T., Kenney, Mariah L., Sturaro, Marcelo J., Ávila‐Pires, Teresa C. S., Peloso, Pedro L. V., Rodrigues, Miguel T., Knowles, L. Lacey

Journal:

Journal of Biogeography

Year:

2019

Language:

english

File:

PDF, 1.58 MB

english, 2019

47

Recombination rate and protein evolution in yeast

Tim Connallon, L Lacey Knowles

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 517 KB

english, 2007

48

Ecological niche models in phylogeographic studies: applications, advances and precautions

Alvarado-Serrano, Diego F., Knowles, L. Lacey

Journal:

Molecular Ecology Resources

Year:

2014

Language:

english

File:

PDF, 242 KB

english, 2014

49

Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers

Carstens, Bryan C., Knowles, L. Lacey

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 1.87 MB

english, 2007

50

Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas ( Ochotona collaris )

Lanier, Hayley C., Massatti, Rob, He, Qixin, Olson, Link E., Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 2.05 MB

english, 2015

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